rs33135734 SNP Detail

Summary

• ID
  rs33135734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126815615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAACAAA AAAAAAACAA AAAAAAAAAA AAACCCGAGG
  ACGTGGGTCC GTGGGAAAGC ACTTTGAAGA CAGTGAGACA GGCAGCCATC ACTATCGCAG
  R
  ACCAAAGAGA CCCCAGGAGT TGAGTTGTGG TGCCCCTCCC CCTTTCCTCT TAGTCAAGCA
  TCTAGTTCCA GGGCTGTATG ACCGGTCTGT TCTGAGCCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261344	NES11576920	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33135734					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261344	NES11576920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126815615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1536 bp distal
Cpgi19732	CpG island 19732	959 bp distal
Rr368445	regulatory region 368445	1574 bp upstream
Rr655747	regulatory region 655747	982 bp distal
Rr655748	regulatory region 655748	1850 bp proximal
Septin1	septin 1	within coordinates
Tssr69180	transcription start site region 69180	1876 bp downstream
Tssr74961	transcription start site region 74961	1680 bp upstream
Tssr74962	transcription start site region 74962	1410 bp upstream
Tssr74963	transcription start site region 74963	1373 bp upstream
Tssr74964	transcription start site region 74964	1340 bp upstream
Tssr74965	transcription start site region 74965	1094 bp upstream
Tssr74966	transcription start site region 74966	1000 bp upstream
Tssr74967	transcription start site region 74967	748 bp upstream
Tssr74968	transcription start site region 74968	1566 bp downstream
Tssr74969	transcription start site region 74969	1928 bp downstream
Tssr74970	transcription start site region 74970	1955 bp downstream