rs33135742 SNP Detail

Summary

• ID
  rs33135742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126815740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGGTGCC CCTCCCCCTT TCCTCTTAGT CAAGCATCTA
  GTTCCAGGGC TGTATGACCG GTCTGTTCTG AGCCTGAGCC CTTAGGGCCA TGGTGCTTGT
  R
  GCAGGATCAT AACCCTTTCC TCACCCCACC CCCAAAAAGG TCACCCCAAG ATTAAAAAAA
  AAGTCCAGAC AGACAAGGTT GAATCATGGC CTTGGCTGTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261353	NES11576923	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33135742					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261353	NES11576923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126815740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1661 bp distal
Cpgi19732	CpG island 19732	1084 bp distal
Gm71806	predicted gene, 71806	1931 bp upstream
Rr368445	regulatory region 368445	1449 bp upstream
Rr655747	regulatory region 655747	1107 bp distal
Rr655748	regulatory region 655748	1725 bp proximal
Rr655749	regulatory region 655749	1958 bp proximal
Septin1	septin 1	within coordinates
Tssr2404	transcription start site region 2404	1944 bp upstream
Tssr74961	transcription start site region 74961	1805 bp upstream
Tssr74962	transcription start site region 74962	1535 bp upstream
Tssr74963	transcription start site region 74963	1498 bp upstream
Tssr74964	transcription start site region 74964	1465 bp upstream
Tssr74965	transcription start site region 74965	1219 bp upstream
Tssr74966	transcription start site region 74966	1125 bp upstream
Tssr74967	transcription start site region 74967	873 bp upstream
Tssr74968	transcription start site region 74968	1441 bp downstream
Tssr74969	transcription start site region 74969	1803 bp downstream
Tssr74970	transcription start site region 74970	1830 bp downstream
Tssr74971	transcription start site region 74971	1899 bp downstream