rs33135869 SNP Detail

Summary

• ID
  rs33135869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95542028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAAGGGG GCAGACACCT
  GTAACCTACT TCTCAAGACT GGCAAGAGGT TTGCTGTGAG TTCAAGGCTA GCCTGGGTTA
  CATAGTGAAA CTGTCCTCCC CCGCCCCCCC CCCCAAAAAA GTAATGATAC ATCCTTGTGA
  TCTTAGCACT GAGGAGGTAG AGATAGGAAA ATCAGAAATT CAAGGCCAGC CACATGCCAG
  Y
  AATCCCAGTT CTCAAAGGCA GGGGTAAGAG AATGGTCTAC ATAGCAAGCC GCACCTGTTC
  AAGCAGCTCT TACAATGCCT GGGAGAAAAC CAGAAAGTGA AGGGAAGGTC TCTCAAAAGA
  ATGCTGTGTA ATATAAAGTG GAGCCTGCCG TGCTTATGGG AATAAACAAT GGGGATAAAA
  CTTGGGGAGC CCTGTATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775906	NES10749912	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33135869					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775906	NES10749912	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95542028 () rs orientation: forward

Symbol	Name	Function Class
Rr69362	regulatory region 69362	1228 bp distal
Rr73413	regulatory region 73413	228 bp distal
Rr82135	regulatory region 82135	1224 bp distal
Rr82136	regulatory region 82136	within coordinates