rs33136213 SNP Detail

Summary

• ID
  rs33136213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126812429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCCTCCC TTCAAAGGGT
  GGAGGGGGAC AGCTGGCTCA GGGCCAGAAT CTGATCTGCC TTGGGCCAAT TCCTGGTTTC
  ATCTGTCCTC ACCCCTACCC CTCCACAGGC GTTCACTGTA ATTGATCAGA ACAGGGATGG
  CATTATCGAC AAAGAGGATC TTCGGGACAC CTTTGCAGCC ATGGGTGAGG CCCCTACTCC
  Y
  ATCTATAAAT GTTGAAAGCT ATGGAGTTGG AGGGGAATCC AGTGGCTTCA GGCCTTAATC
  TGCCCAGATG AAAAAAATGA ATGAGCTAAT ATAAGCTTAT GAGAAGCACA CCTCTGGTCC
  CCAACACCCA ACTCCAACCC CTAACGCTCA CCCCATTCAG GCCGTCTCAA TGTGAAGAAT
  GAGGAACTCG ACGCTATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261263	NES11577029	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33136213					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261263	NES11577029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126812429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1339 bp proximal
Cpgi19732	CpG island 19732	1954 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	within coordinates
Rr655745	regulatory region 655745	1882 bp distal
Rr655746	regulatory region 655746	436 bp proximal
Septin1	septin 1	1190 bp downstream
Tssr69169	transcription start site region 69169	1546 bp downstream
Tssr69170	transcription start site region 69170	627 bp downstream
Tssr69171	transcription start site region 69171	620 bp downstream
Tssr69172	transcription start site region 69172	585 bp downstream
Tssr69173	transcription start site region 69173	394 bp downstream
Tssr69174	transcription start site region 69174	128 bp downstream
Tssr69175	transcription start site region 69175	109 bp downstream
Tssr69176	transcription start site region 69176	68 bp downstream
Tssr69177	transcription start site region 69177	54 bp downstream
Tssr69178	transcription start site region 69178	949 bp upstream
Tssr69179	transcription start site region 69179	993 bp upstream
Tssr69180	transcription start site region 69180	1275 bp upstream
Tssr74959	transcription start site region 74959	209 bp downstream
Tssr74960	transcription start site region 74960	930 bp downstream
Tssr74961	transcription start site region 74961	1489 bp downstream
Tssr74962	transcription start site region 74962	1757 bp downstream
Tssr74963	transcription start site region 74963	1786 bp downstream
Tssr74964	transcription start site region 74964	1828 bp downstream