rs33136294 SNP Detail

Summary

• ID
  rs33136294
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAGAAAAGC AAGCAAGCAA GCTAAACTAA TGGTGGCACA CACCTGTAAT CTCAGCACAT
  GGGAGGCAGA GGCAGAAGGT TATCCTCAAC TATAAAGCAA GTTTGAGGCC AGCCCAGGAT
  ATATGAGACC CTGCTTCAAA AAACAAATTA AAAAAAAGGA GGAGGAAGAG GAGGAGGAGA
  GGACGATGAC AAAAAACCCT CATCACTGGG AAGATATAGT TCATTGCTAG AGCTTGTTTA
  GCAAGGTGCT AAGTTCCATC CCTAACACCA CAAAAATAAA AATCCTCAAA ACAACCCTAA
  K
  ATAAGAACTA ATATAAAAAA CTTCATAGGT AATGGGAGAC AAAGAGAGTA GAAAATGTTG
  GTGACTGTGG GCAACTGGGA AGAGAAAACT GATTTAAAAT GGGGTTATCT CCGAGGTCAC
  CCTTAAGGAG CATTATCATA AAGACACAGA GGAGGAAGAG GAGAGACCCA TGCATTGAGT
  GGTATGCATT ACAGACAGGA CAGAGGCGGG GTGGGGGGAC CACTGCTGAG TCATTCAGGG
  ACTGTTTGCT TTCCTCAGAG ATGAACTCGC TGAGAGATTG GGAGCAGACA CTTTATAGGC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39498854	mCV24098872	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33136294					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858620 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	within coordinates
Tssr143785	transcription start site region 143785	1834 bp downstream
Tssr143786	transcription start site region 143786	1816 bp downstream
Tssr143787	transcription start site region 143787	1536 bp downstream
Tssr143788	transcription start site region 143788	1523 bp downstream
Tssr143789	transcription start site region 143789	1505 bp downstream
Tssr143790	transcription start site region 143790	1553 bp upstream
Tssr147440	transcription start site region 147440	265 bp downstream