rs33136343 SNP Detail

Summary

• ID
  rs33136343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114271364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG ACAGCTTGGT CTACAGAGTT
  R
  AGTTCCAGGA CCAGACAGAG AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45741653	mCV24685757	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss321651949	CHEV_5_114583312	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33136343					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114271364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	1449 bp distal
Gm73235	predicted gene, 73235	within coordinates
Rr617831	regulatory region 617831	1300 bp distal
Rr617832	regulatory region 617832	770 bp proximal
Rr617833	regulatory region 617833	1273 bp proximal
Tssr48060	transcription start site region 48060	1074 bp downstream
Tssr52696	transcription start site region 52696	1706 bp upstream
Ung	uracil DNA glycosylase	within coordinates