rs33136408 SNP Detail

Summary

• ID
  rs33136408
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126815994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAG TCCAGACAGA
  CAAGGTTGAA TCATGGCCTT GGCTGTCACT TAGGGGCCTC AGCCATACCT TCTGCTTGAG
  GGCCTGAGTC TCCCTAGGCA TCAGGGCGTC TGCTTTACCG ATGACCGGGA TGATATTGAC
  TTTCTCGTGC ACTGCCCGGA GGAAAGCCAC ATCTAGGGGC CGGAGCCTGT TTCAGGGATT
  K
  ATTGGTCAGG ACTCAGCTTC AAGTACTGAG CTTTCTCCAG CCTCCCCAAC CAGTCCACCC
  CCAGGGTGCT CTCCAGACCC TCGGCCAAAG GGTGAGATGA AGTAGAGGCA GCAATGGACT
  CTGGAATCCT GGATGTTCTT CCTGTTCAAG CCACTCTCAT CCCTGAGGTA TTGCTCAAAC
  TGCTCCTCAA TGAAGCGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261359	NES11576925	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33136408					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261359	NES11576925	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126815994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1915 bp distal
Cpgi19732	CpG island 19732	1338 bp distal
Gm71806	predicted gene, 71806	1677 bp upstream
Rr368445	regulatory region 368445	1195 bp upstream
Rr655747	regulatory region 655747	1361 bp distal
Rr655748	regulatory region 655748	1471 bp proximal
Rr655749	regulatory region 655749	1704 bp proximal
Septin1	septin 1	within coordinates
Tssr2404	transcription start site region 2404	1690 bp upstream
Tssr74962	transcription start site region 74962	1789 bp upstream
Tssr74963	transcription start site region 74963	1752 bp upstream
Tssr74964	transcription start site region 74964	1719 bp upstream
Tssr74965	transcription start site region 74965	1473 bp upstream
Tssr74966	transcription start site region 74966	1379 bp upstream
Tssr74967	transcription start site region 74967	1127 bp upstream
Tssr74968	transcription start site region 74968	1187 bp downstream
Tssr74969	transcription start site region 74969	1549 bp downstream
Tssr74970	transcription start site region 74970	1576 bp downstream
Tssr74971	transcription start site region 74971	1645 bp downstream
Tssr74972	transcription start site region 74972	1909 bp downstream