rs33136761 SNP Detail

Summary

• ID
  rs33136761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126812732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCACACC TCTGGTCCCC
  AACACCCAAC TCCAACCCCT AACGCTCACC CCATTCAGGC CGTCTCAATG TGAAGAATGA
  GGAACTCGAC GCTATGATGA AGGAAGCCAG TGGGCCCATC AACTTCACTG TCTTCCTGAC
  CATGTTTGGG GAAAAGCTTA AGGGTGAGTA AAAGGTTCTC CACCCAAGAC CCTGGTTGCT
  Y
  TTTCCAGACC TTTGGGGACG CGCTAGACTC GTGTCCTCTG TCCCTGCAGG TGCGGACCCG
  GAGGATGTGA TCACTGGAGC CTTCAAGGTC CTGGACCCAG AAGGGAAGGG CACCATCAAA
  AAGCAGTTGT GAGTGGCTCC CTCTAGTGGC TCTACTGTCT TTTCCAAAAA TCCCTGCTTA
  GGGGTGACAG GTTGACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261272	NES11577037	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33136761					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261272	NES11577037	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126812732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1036 bp proximal
Cpgi19732	CpG island 19732	1651 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	within coordinates
Rr655746	regulatory region 655746	133 bp proximal
Rr655747	regulatory region 655747	1880 bp proximal
Septin1	septin 1	887 bp downstream
Tssr69169	transcription start site region 69169	1849 bp downstream
Tssr69170	transcription start site region 69170	930 bp downstream
Tssr69171	transcription start site region 69171	923 bp downstream
Tssr69172	transcription start site region 69172	888 bp downstream
Tssr69173	transcription start site region 69173	697 bp downstream
Tssr69174	transcription start site region 69174	431 bp downstream
Tssr69175	transcription start site region 69175	412 bp downstream
Tssr69176	transcription start site region 69176	371 bp downstream
Tssr69177	transcription start site region 69177	357 bp downstream
Tssr69178	transcription start site region 69178	646 bp upstream
Tssr69179	transcription start site region 69179	690 bp upstream
Tssr69180	transcription start site region 69180	972 bp upstream
Tssr74959	transcription start site region 74959	82 bp upstream
Tssr74960	transcription start site region 74960	627 bp downstream
Tssr74961	transcription start site region 74961	1186 bp downstream
Tssr74962	transcription start site region 74962	1454 bp downstream
Tssr74963	transcription start site region 74963	1483 bp downstream
Tssr74964	transcription start site region 74964	1525 bp downstream
Tssr74965	transcription start site region 74965	1769 bp downstream
Tssr74966	transcription start site region 74966	1819 bp downstream