rs33136812 SNP Detail

Summary

• ID
  rs33136812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95593557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCTCCT CCCGCTCACA
  GAACCCAAGA GCATTTGTTT CTTTTCCTTT TAACTAAGCT CCTTACGGAG GACAAGGCTC
  ATACAGGCTG CCCCGGGCAT TTTTTTTTGT CCAAGGGATA AACTAAGTGG GTTAATGGCT
  TCATCTCCTG AGAAGAGGCA GTGACTTATC CTCCCCATGA GTGCCAGCAT CCACAAGGCA
  Y
  TGGCTCAGGG TGACTTAGCT CATGTACAAC TAGTTTTCTG CTTTTTTTTT TTTCCTTACA
  ATGCTCAGCC AAACTGGGAC ACCTAAGAAG GAGAGATGTA GCCATAGCAG CCCATGCTTG
  CCAGGTTCTC CCTCCCGTAT CCCTGGAAAG TCCACCCTTA AGTCTAGCTG TAAACACTGG
  GTAGCAGGGG TCTTCATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776272	NES10747910	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33136812					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776272	NES10747910	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95593557 () rs orientation: forward

Symbol	Name	Function Class
Adamtsl4	ADAMTS-like 4	Intron
Cpgi13518	CpG island 13518	1265 bp proximal
Rr581016	regulatory region 581016	531 bp proximal
Rr581017	regulatory region 581017	1602 bp proximal
Tssr34517	transcription start site region 34517	1691 bp upstream
Tssr34518	transcription start site region 34518	640 bp upstream
Tssr34519	transcription start site region 34519	1600 bp downstream