rs33137754 SNP Detail

Summary

• ID
  rs33137754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126812745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCCAAC ACCCAACTCC
  AACCCCTAAC GCTCACCCCA TTCAGGCCGT CTCAATGTGA AGAATGAGGA ACTCGACGCT
  ATGATGAAGG AAGCCAGTGG GCCCATCAAC TTCACTGTCT TCCTGACCAT GTTTGGGGAA
  AAGCTTAAGG GTGAGTAAAA GGTTCTCCAC CCAAGACCCT GGTTGCTCTT TCCAGACCTT
  Y
  GGGGACGCGC TAGACTCGTG TCCTCTGTCC CTGCAGGTGC GGACCCGGAG GATGTGATCA
  CTGGAGCCTT CAAGGTCCTG GACCCAGAAG GGAAGGGCAC CATCAAAAAG CAGTTGTGAG
  TGGCTCCCTC TAGTGGCTCT ACTGTCTTTT CCAAAAATCC CTGCTTAGGG GTGACAGGTT
  GACAGAATGC ATGAGCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261275	NES11577040	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33137754					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261275	NES11577040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126812745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1023 bp proximal
Cpgi19732	CpG island 19732	1638 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	within coordinates
Rr655746	regulatory region 655746	120 bp proximal
Rr655747	regulatory region 655747	1867 bp proximal
Septin1	septin 1	874 bp downstream
Tssr69169	transcription start site region 69169	1862 bp downstream
Tssr69170	transcription start site region 69170	943 bp downstream
Tssr69171	transcription start site region 69171	936 bp downstream
Tssr69172	transcription start site region 69172	901 bp downstream
Tssr69173	transcription start site region 69173	710 bp downstream
Tssr69174	transcription start site region 69174	444 bp downstream
Tssr69175	transcription start site region 69175	425 bp downstream
Tssr69176	transcription start site region 69176	384 bp downstream
Tssr69177	transcription start site region 69177	370 bp downstream
Tssr69178	transcription start site region 69178	633 bp upstream
Tssr69179	transcription start site region 69179	677 bp upstream
Tssr69180	transcription start site region 69180	959 bp upstream
Tssr74959	transcription start site region 74959	95 bp upstream
Tssr74960	transcription start site region 74960	614 bp downstream
Tssr74961	transcription start site region 74961	1173 bp downstream
Tssr74962	transcription start site region 74962	1441 bp downstream
Tssr74963	transcription start site region 74963	1470 bp downstream
Tssr74964	transcription start site region 74964	1512 bp downstream
Tssr74965	transcription start site region 74965	1756 bp downstream
Tssr74966	transcription start site region 74966	1806 bp downstream