rs33137762 SNP Detail

Summary

• ID
  rs33137762
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126812961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGTCCTC TGTCCCTGCA
  GGTGCGGACC CGGAGGATGT GATCACTGGA GCCTTCAAGG TCCTGGACCC AGAAGGGAAG
  GGCACCATCA AAAAGCAGTT GTGAGTGGCT CCCTCTAGTG GCTCTACTGT CTTTTCCAAA
  AATCCCTGCT TAGGGGTGAC AGGTTGACAG AATGCATGAG CAGTAAGGAC TGGGTGACAT
  W
  TTTATAATAA CTAAGGGAAG AAATTCTAGA CAGTACTTGG GAGATGCGCC AGACATGTTT
  CAGGAACGGT TGGTGGGAAC AGGAATGAAA TGAGAGGGGA CCGTACTCAT GAATCCAATC
  TCACCTCCCC GAATGTCCTT CTCAGCTTGG AGGAGCTGCT TACCACGCAG TGCGACCGAT
  TTTCCCAGGA GGAGGTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261284	NES11577047	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33137762					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261284	NES11577047	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126812961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	807 bp proximal
Cpgi19732	CpG island 19732	1422 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	within coordinates
Rr655746	regulatory region 655746	75 bp distal
Rr655747	regulatory region 655747	1651 bp proximal
Septin1	septin 1	658 bp downstream
Tssr69170	transcription start site region 69170	1159 bp downstream
Tssr69171	transcription start site region 69171	1152 bp downstream
Tssr69172	transcription start site region 69172	1117 bp downstream
Tssr69173	transcription start site region 69173	926 bp downstream
Tssr69174	transcription start site region 69174	660 bp downstream
Tssr69175	transcription start site region 69175	641 bp downstream
Tssr69176	transcription start site region 69176	600 bp downstream
Tssr69177	transcription start site region 69177	586 bp downstream
Tssr69178	transcription start site region 69178	417 bp upstream
Tssr69179	transcription start site region 69179	461 bp upstream
Tssr69180	transcription start site region 69180	743 bp upstream
Tssr74959	transcription start site region 74959	311 bp upstream
Tssr74960	transcription start site region 74960	398 bp downstream
Tssr74961	transcription start site region 74961	957 bp downstream
Tssr74962	transcription start site region 74962	1225 bp downstream
Tssr74963	transcription start site region 74963	1254 bp downstream
Tssr74964	transcription start site region 74964	1296 bp downstream
Tssr74965	transcription start site region 74965	1540 bp downstream
Tssr74966	transcription start site region 74966	1590 bp downstream
Tssr74967	transcription start site region 74967	1894 bp downstream