rs33138242 SNP Detail

Summary

• ID
  rs33138242
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93286127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT GAACGTTTTG CCTCTATGCA
  W
  AGAAATGTAC TGTGTGTTGT TTGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45241741	mCV23858109	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss146943840	ENSMUSSNP5313468	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320395947	CHEV_2_93295939	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33138242					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93286127 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	within coordinates
Gm10804	predicted gene 10804	within coordinates
Rr561203	regulatory region 561203	798 bp distal
Rr561204	regulatory region 561204	764 bp distal
Rr561205	regulatory region 561205	1697 bp proximal
Tssr18995	transcription start site region 18995	1104 bp downstream