rs33138595 SNP Detail

Summary

• ID
  rs33138595
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126813065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTCCCT CTAGTGGCTC
  TACTGTCTTT TCCAAAAATC CCTGCTTAGG GGTGACAGGT TGACAGAATG CATGAGCAGT
  AAGGACTGGG TGACATTTTT ATAATAACTA AGGGAAGAAA TTCTAGACAG TACTTGGGAG
  ATGCGCCAGA CATGTTTCAG GAACGGTTGG TGGGAACAGG AATGAAATGA GAGGGGACCG
  K
  ACTCATGAAT CCAATCTCAC CTCCCCGAAT GTCCTTCTCA GCTTGGAGGA GCTGCTTACC
  ACGCAGTGCG ACCGATTTTC CCAGGAGGAG GTGAGTTGGG GAGAGCCCGG GAAGGAAGAG
  GACTCCGAGT GGAGGGAAGT GGGAGAGAGG GAAGCAGTGG GGGAACCGGT CCTAGAGCTA
  CTCCTGTCTT CCTACAGATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261287	NES11577049	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33138595					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261287	NES11577049	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126813065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	703 bp proximal
Cpgi19732	CpG island 19732	1318 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	within coordinates
Rr655746	regulatory region 655746	179 bp distal
Rr655747	regulatory region 655747	1547 bp proximal
Septin1	septin 1	554 bp downstream
Tssr69170	transcription start site region 69170	1263 bp downstream
Tssr69171	transcription start site region 69171	1256 bp downstream
Tssr69172	transcription start site region 69172	1221 bp downstream
Tssr69173	transcription start site region 69173	1030 bp downstream
Tssr69174	transcription start site region 69174	764 bp downstream
Tssr69175	transcription start site region 69175	745 bp downstream
Tssr69176	transcription start site region 69176	704 bp downstream
Tssr69177	transcription start site region 69177	690 bp downstream
Tssr69178	transcription start site region 69178	313 bp upstream
Tssr69179	transcription start site region 69179	357 bp upstream
Tssr69180	transcription start site region 69180	639 bp upstream
Tssr74959	transcription start site region 74959	415 bp upstream
Tssr74960	transcription start site region 74960	294 bp downstream
Tssr74961	transcription start site region 74961	853 bp downstream
Tssr74962	transcription start site region 74962	1121 bp downstream
Tssr74963	transcription start site region 74963	1150 bp downstream
Tssr74964	transcription start site region 74964	1192 bp downstream
Tssr74965	transcription start site region 74965	1436 bp downstream
Tssr74966	transcription start site region 74966	1486 bp downstream
Tssr74967	transcription start site region 74967	1790 bp downstream