rs33138597 SNP Detail

Summary

• ID
  rs33138597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126813188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACAGTAC TTGGGAGATG
  CGCCAGACAT GTTTCAGGAA CGGTTGGTGG GAACAGGAAT GAAATGAGAG GGGACCGTAC
  TCATGAATCC AATCTCACCT CCCCGAATGT CCTTCTCAGC TTGGAGGAGC TGCTTACCAC
  GCAGTGCGAC CGATTTTCCC AGGAGGAGGT GAGTTGGGGA GAGCCCGGGA AGGAAGAGGA
  Y
  TCCGAGTGGA GGGAAGTGGG AGAGAGGGAA GCAGTGGGGG AACCGGTCCT AGAGCTACTC
  CTGTCTTCCT ACAGATCAAG AACATGTGGG CAGCCTTCCC CCCAGACGTG GGCGGCAACG
  TGGACTACAA GAACATCTGC TACGTCATCA CACATGGTGA TGCTAAGGAC CAGGAATAGG
  GGACCCAAGG TCTCAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261290	NES11577052	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33138597					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261290	NES11577052	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126813188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	580 bp proximal
Cpgi19732	CpG island 19732	1195 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	within coordinates
Rr655746	regulatory region 655746	302 bp distal
Rr655747	regulatory region 655747	1424 bp proximal
Septin1	septin 1	431 bp downstream
Tssr69170	transcription start site region 69170	1386 bp downstream
Tssr69171	transcription start site region 69171	1379 bp downstream
Tssr69172	transcription start site region 69172	1344 bp downstream
Tssr69173	transcription start site region 69173	1153 bp downstream
Tssr69174	transcription start site region 69174	887 bp downstream
Tssr69175	transcription start site region 69175	868 bp downstream
Tssr69176	transcription start site region 69176	827 bp downstream
Tssr69177	transcription start site region 69177	813 bp downstream
Tssr69178	transcription start site region 69178	190 bp upstream
Tssr69179	transcription start site region 69179	234 bp upstream
Tssr69180	transcription start site region 69180	516 bp upstream
Tssr74959	transcription start site region 74959	538 bp upstream
Tssr74960	transcription start site region 74960	171 bp downstream
Tssr74961	transcription start site region 74961	730 bp downstream
Tssr74962	transcription start site region 74962	998 bp downstream
Tssr74963	transcription start site region 74963	1027 bp downstream
Tssr74964	transcription start site region 74964	1069 bp downstream
Tssr74965	transcription start site region 74965	1313 bp downstream
Tssr74966	transcription start site region 74966	1363 bp downstream
Tssr74967	transcription start site region 74967	1667 bp downstream