rs33138603 SNP Detail

Summary

• ID
  rs33138603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126813490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACGTGG GCGGCAACGT
  GGACTACAAG AACATCTGCT ACGTCATCAC ACATGGTGAT GCTAAGGACC AGGAATAGGG
  GACCCAAGGT CTCAGAAGAC CTAGATAGGC TTGTAGCCGC TCCATCTCTC ACCCTGGCCC
  TCAATAAAAC TCAACTGGTC TTTGTTTCTT ATTGGTGGCA ATTTCAGTGT GTTCATGCGC
  R
  AACTCAGGTG GGAGGCTGAA ACAACGGCCC AGACAGACAG GAGTGGCTAA CAGTGGAATG
  ACTAGTGGCC AGGAGGCCCC CAGCGGGCAG CTCCATTCCT GCTGGGAAGA AGACTCCGGC
  AGCTGGGGGA AGGCGGGAAG CAGTTTTTAT TAGATGGAGA ACTTGGAGGA ATAGGAAAAC
  CCAATTGGAA CGCGGGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261296	NES11577057	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33138603					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261296	NES11577057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126813490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	278 bp proximal
Cpgi19732	CpG island 19732	893 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	31 bp downstream
Rr655746	regulatory region 655746	604 bp distal
Rr655747	regulatory region 655747	1122 bp proximal
Septin1	septin 1	129 bp downstream
Tssr69170	transcription start site region 69170	1688 bp downstream
Tssr69171	transcription start site region 69171	1681 bp downstream
Tssr69172	transcription start site region 69172	1646 bp downstream
Tssr69173	transcription start site region 69173	1455 bp downstream
Tssr69174	transcription start site region 69174	1189 bp downstream
Tssr69175	transcription start site region 69175	1170 bp downstream
Tssr69176	transcription start site region 69176	1129 bp downstream
Tssr69177	transcription start site region 69177	1115 bp downstream
Tssr69178	transcription start site region 69178	74 bp downstream
Tssr69179	transcription start site region 69179	57 bp downstream
Tssr69180	transcription start site region 69180	214 bp upstream
Tssr74959	transcription start site region 74959	840 bp upstream
Tssr74960	transcription start site region 74960	101 bp upstream
Tssr74961	transcription start site region 74961	428 bp downstream
Tssr74962	transcription start site region 74962	696 bp downstream
Tssr74963	transcription start site region 74963	725 bp downstream
Tssr74964	transcription start site region 74964	767 bp downstream
Tssr74965	transcription start site region 74965	1011 bp downstream
Tssr74966	transcription start site region 74966	1061 bp downstream
Tssr74967	transcription start site region 74967	1365 bp downstream