rs33138612 SNP Detail

Summary

• ID
  rs33138612
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39400099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCAAGCAA TGAGGCAGAG AGACAGAGAT GGATGTGGGA
  AGAGGAGAGG TCTCCATGTG ACTTCAGCAG CCGCAGTTTG CAAACACCTG CTGCATTCAC
  S
  ATGCAAAGTA AAGATGCTAG AGTGCTTCAG CAACCGTGGT GCCCTTGACA TCTCAGAGCA
  CATGCATACA TGGAGGTGGG CTGCACAGCA CAGCTGTGTG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261655	NES11031736	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33138612					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261655	NES11031736	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39400099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi184	CpG island 184	939 bp proximal
Gm53549	predicted gene, 53549	1957 bp downstream
Npas2	neuronal PAS domain protein 2	within coordinates
Rr16114	regulatory region 16114	1102 bp proximal
Rr26812	regulatory region 26812	1086 bp distal
Tssr6374	transcription start site region 6374	1974 bp upstream