rs33138638 SNP Detail

Summary

• ID
  rs33138638
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24914185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAC CGCCCGGCAT CAGCTAGGCC
  V
  GCTCTAGGGA CCTTACTGAC AAGAG                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss39499448	mCV24347746	ABI	CRAMUS_MOUSE	f	SNP		G	G		C	G
ss60552613	NES16570803	PERLEGEN	MM_PANEL2	f	SNP	G		G	G			G		C	G	C
ss145361460	ENSMUSSNP4209089	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss325333066	CHEV_17_24832156	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs33138638					SNP	G	G	G	G	C	G	G	G	C	G	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552613	NES16570803	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24914185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	393 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	1023 bp upstream
Rr523392	regulatory region 523392	485 bp proximal
Rr523393	regulatory region 523393	847 bp proximal
Rr523394	regulatory region 523394	1308 bp proximal
Tssr5034	transcription start site region 5034	1345 bp downstream
Tssr143060	transcription start site region 143060	1065 bp upstream
Tssr143061	transcription start site region 143061	1449 bp upstream
Tssr146764	transcription start site region 146764	776 bp downstream
Tssr146765	transcription start site region 146765	854 bp downstream
Tssr146766	transcription start site region 146766	910 bp downstream
Tssr146767	transcription start site region 146767	936 bp downstream
Tssr146768	transcription start site region 146768	986 bp downstream
Tssr146769	transcription start site region 146769	1294 bp downstream
Tssr146770	transcription start site region 146770	1330 bp downstream
Tssr146771	transcription start site region 146771	1358 bp downstream