rs33138713 SNP Detail

Summary

• ID
  rs33138713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95618385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTATATG ACATACCTCT
  ACAGTATGTA GGGATTGGGC TTCCCAGATA AGGTCAGGCG GAGGAGAGAA AGCCCCACTG
  AAAAAGAGAG TCCTCTCTTT TGTTCCAACA TCAGGAAGCT ATCTGGTCAT AGTAGACTGT
  GATCTCCATA GCAGGGCTTC CCAACAATAG TGGTGTTAAA GGAGGAAGAT GGGACAAAGT
  Y
  GTTTTTTCTT AAGAGGTCGG AGATGATAGG TTTAAGTTCC AGAAACTCTG GAGATAGTGG
  GTACTGAGCT TGGGTGATGT ACCAGGTAGG ATGGTACATG GTATTGGATG ATAATGGGGA
  ATGGTGTTCA GCAACTGAGG AATTTGGACA TCCCAGACTT GGGGGGTCCA TCTGGGAGGA
  TGGCAAAGGA GATGATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776398	NES10746836	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33138713					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776398	NES10746836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95618385 () rs orientation: forward

Symbol	Name	Function Class
D3Umi15	DNA segment, Chr 3, University of Michigan 15	553 bp proximal
Tssr34521	transcription start site region 34521	375 bp upstream