rs33139290 SNP Detail

Summary

• ID
  rs33139290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31343084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGGCATTT AAAAATCAAA AGTAATACAT AGATATGTAG
  TGAATAAAAT GTCAAAAATC TGTGCTTAGA TAAGAGTACC CCACTTCTAC ATTGTAATCT
  Y
  GGCCCTGCTT CCAATAAACC TTTATTTATT AAAGCAAGTA GGAGCCAAGG AGGCAGGGGC
  TTTGCCTACC ATACAGGCTC AAATGTCTGT CTCTGGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss39499357	mCV22897526	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		C
ss60562273	NES16490741	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	T	T		T		T	C		C	C	C		T
ss145456789	ENSMUSSNP2763010	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T							C
ss325358774	CHEV_17_31261055	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33139290					SNP	C	T	T	C	T	T	T	T	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562273	NES16490741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31343084 () rs orientation: forward

Symbol	Name	Function Class
Rr330604	regulatory region 330604	1484 bp distal
Rr334775	regulatory region 334775	1117 bp proximal
Rr341219	regulatory region 341219	1684 bp distal
Tff3	trefoil factor 3, intestinal	1196 bp downstream