rs33139557 SNP Detail

Summary

• ID
  rs33139557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39400308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACATGCATA CATGGAGGTG GGCTGCACAG
  CACAGCTGTG TGCTCCGGCC CTAGCGGTGC ACAGAGAGAA TGGTAGAGAA ACCTTCCTTC
  CTGAAGGAAG GCTCAGAGGC ATCTCTGGCA GAACCCGACC ATCAAGAAAA TACTGAGTTT
  R
  AGTGAAAGAG AAGAGATGAG AGGAGGGTGT TTTAGCAGGC CAGGGATAGG TATGCTGCCA
  AGTCTCCGAG GTAGTATAGG GGCACTAGGA TAGTAACAAG GGACATTTAT TGTAGGCAAG
  ATTGGAAAAT AAGAGTGAAA CTGCCAAAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47261661	NES11031738	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G		G	G	G	G		A
ss148967734	ENSMUSSNP6295587	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss319695450	CHEV_1_39418072	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33139557					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261661	NES11031738	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39400308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi184	CpG island 184	730 bp proximal
Gm53549	predicted gene, 53549	1748 bp downstream
Npas2	neuronal PAS domain protein 2	within coordinates
Rr16114	regulatory region 16114	893 bp proximal
Rr26812	regulatory region 26812	1295 bp distal
Tssr6374	transcription start site region 6374	1765 bp upstream