rs33139560 SNP Detail

Summary

• ID
  rs33139560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39400660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTGACTG GTTGACTGAT
  TTGCATTTCC AATCAGGAAC TTGTCTTTCC AGGTTCTGGA AAAACGGCAG TATTTGAAGT
  AGACACAGGA CCTAATCTAA GAGCCATGCA CGTGTGTGCA GATTCTTCCC CACCCATAAA
  TTACATGGGC CTCAGGCTCC ACCATCCACA AACACAGAAG ACTTTACATA GATGGTGTGC
  Y
  TCTGATTCAG CCTCAGTCCC AAGCCCATTG ACCCAGAAGG AGCCCCCCCC CCCTTCCCCA
  CCCAGAGTTG ATGCACAAGG GTGCAGTCAG AAAGCTTGGC TTTTCCCCAT CATGCACTCA
  GACATGCACT CACCAGCACG CATGCCTAGC GGTCTGAGGA GGGAGTCCCA GAATCTGGCA
  GCATCTGCTG CAAACCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	MOLF/EiJ
ss47261664	NES11031740	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	MOLF/EiJ
rs33139560					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261664	NES11031740	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39400660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi184	CpG island 184	378 bp proximal
Gm53549	predicted gene, 53549	1396 bp downstream
Npas2	neuronal PAS domain protein 2	within coordinates
Rr16114	regulatory region 16114	541 bp proximal
Rr26812	regulatory region 26812	1647 bp distal
Tssr6374	transcription start site region 6374	1413 bp upstream