rs33139576 SNP Detail

Summary

• ID
  rs33139576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126813662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGCAAT TTCAGTGTGT
  TCATGCGCAA ACTCAGGTGG GAGGCTGAAA CAACGGCCCA GACAGACAGG AGTGGCTAAC
  AGTGGAATGA CTAGTGGCCA GGAGGCCCCC AGCGGGCAGC TCCATTCCTG CTGGGAAGAA
  GACTCCGGCA GCTGGGGGAA GGCGGGAAGC AGTTTTTATT AGATGGAGAA CTTGGAGGAA
  Y
  AGGAAAACCC AATTGGAACG CGGGAAGAGC GGTGGGGGGG GGGGGGGAGG AGTGGTGGGG
  AGGCTTTTCT TGGAGTGCGG TCCTCTTAGA GCCGCGCGGA AGACGAAGTC GGATGGGCCT
  TAAACTTCCG GATTGGAGGG ATCTGGTTTA AGTGCAAGGG CAGGCCTACC CTCTGGATCC
  CCGGATTGGG CGCTGGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261299	NES11577059	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33139576					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261299	NES11577059	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126813662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	106 bp proximal
Cpgi19732	CpG island 19732	721 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	203 bp downstream
Rr655746	regulatory region 655746	776 bp distal
Rr655747	regulatory region 655747	950 bp proximal
Septin1	septin 1	within coordinates
Tssr69170	transcription start site region 69170	1860 bp downstream
Tssr69171	transcription start site region 69171	1853 bp downstream
Tssr69172	transcription start site region 69172	1818 bp downstream
Tssr69173	transcription start site region 69173	1627 bp downstream
Tssr69174	transcription start site region 69174	1361 bp downstream
Tssr69175	transcription start site region 69175	1342 bp downstream
Tssr69176	transcription start site region 69176	1301 bp downstream
Tssr69177	transcription start site region 69177	1287 bp downstream
Tssr69178	transcription start site region 69178	246 bp downstream
Tssr69179	transcription start site region 69179	229 bp downstream
Tssr69180	transcription start site region 69180	42 bp upstream
Tssr74959	transcription start site region 74959	1012 bp upstream
Tssr74960	transcription start site region 74960	273 bp upstream
Tssr74961	transcription start site region 74961	256 bp downstream
Tssr74962	transcription start site region 74962	524 bp downstream
Tssr74963	transcription start site region 74963	553 bp downstream
Tssr74964	transcription start site region 74964	595 bp downstream
Tssr74965	transcription start site region 74965	839 bp downstream
Tssr74966	transcription start site region 74966	889 bp downstream
Tssr74967	transcription start site region 74967	1193 bp downstream