rs33139579 SNP Detail

Summary

• ID
  rs33139579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126813827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTCTTGGA GTGCGGTCCT CTTAGAGCCG CGCGGAAGAC
  GAAGTCGGAT GGGCCTTAAA CTTCCGGATT GGAGGGATCT GGTTTAAGTG CAAGGGCAGG
  M
  CTACCCTCTG GATCCCCGGA TTGGGCGCTG GGCTGTCCAG CGCGGGGATG GGATAGCCGA
  TTAGCGGTGA GCAGAGGCGA GGACAGGCGG TATTGGGGAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261302	NES11577061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33139579					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261302	NES11577061	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126813827 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19731	CpG island 19731			within coordinates
Cpgi19732	CpG island 19732			556 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle			368 bp downstream
Rr655746	regulatory region 655746			941 bp distal
Rr655747	regulatory region 655747			785 bp proximal
Septin1	septin 1			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr69172	transcription start site region 69172			1983 bp downstream
Tssr69173	transcription start site region 69173			1792 bp downstream
Tssr69174	transcription start site region 69174			1526 bp downstream
Tssr69175	transcription start site region 69175			1507 bp downstream
Tssr69176	transcription start site region 69176			1466 bp downstream
Tssr69177	transcription start site region 69177			1452 bp downstream
Tssr69178	transcription start site region 69178			411 bp downstream
Tssr69179	transcription start site region 69179			394 bp downstream
Tssr69180	transcription start site region 69180			88 bp downstream
Tssr74959	transcription start site region 74959			1177 bp upstream
Tssr74960	transcription start site region 74960			438 bp upstream
Tssr74961	transcription start site region 74961			91 bp downstream
Tssr74962	transcription start site region 74962			359 bp downstream
Tssr74963	transcription start site region 74963			388 bp downstream
Tssr74964	transcription start site region 74964			430 bp downstream
Tssr74965	transcription start site region 74965			674 bp downstream
Tssr74966	transcription start site region 74966			724 bp downstream
Tssr74967	transcription start site region 74967			1028 bp downstream