rs33139680 SNP Detail

Summary

• ID
  rs33139680
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:9228579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTATCCTC TGCACATCTG
  CATCCTTTAT ACAACCTAGA GTGGTCTGGG AAGAGTGGGC CTTGACTGGG AAAATGCCCC
  CATTAGATTG GCCTGTGGGC AAGCCTGTGA ACATTTTCTT GATTAATGAT TGATGTGGGA
  GGGCCCAGCC CACTGTGCAC AGGTAGGTGG CCCTGGGTTG TATAAGGGAG CAGGCAGAAG
  M
  AGCCAGGACA GAAAGATACG CCACGGCCTC TGCATCTGCT CCTGCCTGCC GCTTTCTGCC
  CGACTGACTT CATTTGTATA CCTTTCCTTC CCCAAGTTGC TCTTGGTAAA GGTGTTTATC
  GCAGCTAGAG GGAGCAAACT ATGCAGCCAT CCCATGTGTG TGGTAGTCAC AGACTTTTAG
  AGACTCTGAA GGCATTTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39499460	mCV22944483	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss145126181	ENSMUSSNP6282430	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33139680					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:9228579 () rs orientation: forward

Symbol	Name	Function Class
1700010I14Rik	RIKEN cDNA 1700010I14 gene	Intron
D17Mit225	DNA Segment, Chr 17, Massachusetts Institute of Technology 225	747 bp proximal
Rr521842	regulatory region 521842	118 bp proximal