rs33140435 SNP Detail

Summary

• ID
  rs33140435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATCTTCTC CAGCATTTCT TGCATGCGGC GCAGCTGTGC
  GGAGCAAGAT TGCAGGCAGT GGAACCCGGC AAGGCCAAAA TGGGATCTAG AAAACGTTCT
  R
  GGGCATTAAT TAGAGGGAAA GAGAAGTGCT TGCTCACCTC TTCGTCCTTC TCGCGAATCA
  ACTTTTCAGT GTCAGCCAGA GGCAACATGG GCAGCGGGAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261308	NES11577065	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33140435					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261308	NES11577065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	4 bp distal
Cpgi19732	CpG island 19732	300 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	624 bp downstream
Rr655746	regulatory region 655746	1197 bp distal
Rr655747	regulatory region 655747	529 bp proximal
Septin1	septin 1	within coordinates
Tssr69174	transcription start site region 69174	1782 bp downstream
Tssr69175	transcription start site region 69175	1763 bp downstream
Tssr69176	transcription start site region 69176	1722 bp downstream
Tssr69177	transcription start site region 69177	1708 bp downstream
Tssr69178	transcription start site region 69178	667 bp downstream
Tssr69179	transcription start site region 69179	650 bp downstream
Tssr69180	transcription start site region 69180	344 bp downstream
Tssr74959	transcription start site region 74959	1433 bp upstream
Tssr74960	transcription start site region 74960	694 bp upstream
Tssr74961	transcription start site region 74961	148 bp upstream
Tssr74962	transcription start site region 74962	103 bp downstream
Tssr74963	transcription start site region 74963	132 bp downstream
Tssr74964	transcription start site region 74964	174 bp downstream
Tssr74965	transcription start site region 74965	418 bp downstream
Tssr74966	transcription start site region 74966	468 bp downstream
Tssr74967	transcription start site region 74967	772 bp downstream