ACAGGCGGTA TTGGGGAATA TCACAGCACA TCTGATTGCT CGCCCTGAGC CTGGCTCTGC TGCATCTGGG CTTGCATCTT CTCCAGCATT TCTTGCATGC GGCGCAGCTG TGCGGAGCAA GATTGCAGGC AGTGGAACCC GGCAAGGCCA AAATGGGATC TAGAAAACGT TCTAGGGCAT TAATTAGAGG GAAAGAGAAG W GCTTGCTCAC CTCTTCGTCC TTCTCGCGAA TCAACTTTTC AGTGTCAGCC AGAGGCAACA TGGGCAGCGG GATCTCTGTG GCACTTTGCC GGGAAAGCTT GCTAAGAGAG TAGAGGGAAA GGTTGTGTGC GTTCAGAAAA CATGTTGACG TCTGACATTG TGGGTCTAGC CTTGGGGCGA ATTCTGAGTG TAGGAGGCGG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47261311 | NES11577068 | PERLEGEN | MM_PANEL2 | f | SNP | T | A | T | T | T | T | T | T | T | T | T | T | T | T | A | |
ss145878288 | ENSMUSSNP5899910 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | A | T | |||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33140438 | SNP | T | T | A | T | T | T | T | T | T | T | T | T | T | T | T | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47261311 | NES11577068 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr7:126814110 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi19731 | CpG island 19731 | 31 bp distal | ||||||
Cpgi19732 | CpG island 19732 | 273 bp proximal | ||||||
Mylpf | myosin light chain, phosphorylatable, fast skeletal muscle | 651 bp downstream | ||||||
Rr655746 | regulatory region 655746 | 1224 bp distal | ||||||
Rr655747 | regulatory region 655747 | 502 bp proximal | ||||||
Septin1 | septin 1 | within coordinates | ||||||
Tssr69174 | transcription start site region 69174 | 1809 bp downstream | ||||||
Tssr69175 | transcription start site region 69175 | 1790 bp downstream | ||||||
Tssr69176 | transcription start site region 69176 | 1749 bp downstream | ||||||
Tssr69177 | transcription start site region 69177 | 1735 bp downstream | ||||||
Tssr69178 | transcription start site region 69178 | 694 bp downstream | ||||||
Tssr69179 | transcription start site region 69179 | 677 bp downstream | ||||||
Tssr69180 | transcription start site region 69180 | 371 bp downstream | ||||||
Tssr74959 | transcription start site region 74959 | 1460 bp upstream | ||||||
Tssr74960 | transcription start site region 74960 | 721 bp upstream | ||||||
Tssr74961 | transcription start site region 74961 | 175 bp upstream | ||||||
Tssr74962 | transcription start site region 74962 | 76 bp downstream | ||||||
Tssr74963 | transcription start site region 74963 | 105 bp downstream | ||||||
Tssr74964 | transcription start site region 74964 | 147 bp downstream | ||||||
Tssr74965 | transcription start site region 74965 | 391 bp downstream | ||||||
Tssr74966 | transcription start site region 74966 | 441 bp downstream | ||||||
Tssr74967 | transcription start site region 74967 | 745 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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