rs33140441 SNP Detail

Summary

• ID
  rs33140441
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCAGGC AGTGGAACCC
  GGCAAGGCCA AAATGGGATC TAGAAAACGT TCTAGGGCAT TAATTAGAGG GAAAGAGAAG
  TGCTTGCTCA CCTCTTCGTC CTTCTCGCGA ATCAACTTTT CAGTGTCAGC CAGAGGCAAC
  ATGGGCAGCG GGATCTCTGT GGCACTTTGC CGGGAAAGCT TGCTAAGAGA GTAGAGGGAA
  M
  GGTTGTGTGC GTTCAGAAAA CATGTTGACG TCTGACATTG TGGGTCTAGC CTTGGGGCGA
  ATTCTGAGTG TAGGAGGCGG GGCCTTGTCC CTGAGGTTAA GGTCAGTGTG GGAGAGGCTT
  AGTTGGATTT GGGAAGCCGA GTTAAGAAGG GTAGCAGGAC CAGTCAGGAA GGCTTGCCCA
  AACGGCGGCG CCATGGAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261314	NES11577071	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33140441					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261314	NES11577071	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	151 bp distal
Cpgi19732	CpG island 19732	153 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	771 bp downstream
Rr655746	regulatory region 655746	1344 bp distal
Rr655747	regulatory region 655747	382 bp proximal
Septin1	septin 1	within coordinates
Tssr69174	transcription start site region 69174	1929 bp downstream
Tssr69175	transcription start site region 69175	1910 bp downstream
Tssr69176	transcription start site region 69176	1869 bp downstream
Tssr69177	transcription start site region 69177	1855 bp downstream
Tssr69178	transcription start site region 69178	814 bp downstream
Tssr69179	transcription start site region 69179	797 bp downstream
Tssr69180	transcription start site region 69180	491 bp downstream
Tssr74959	transcription start site region 74959	1580 bp upstream
Tssr74960	transcription start site region 74960	841 bp upstream
Tssr74961	transcription start site region 74961	295 bp upstream
Tssr74962	transcription start site region 74962	25 bp upstream
Tssr74963	transcription start site region 74963	within coordinates
Tssr74964	transcription start site region 74964	27 bp downstream
Tssr74965	transcription start site region 74965	271 bp downstream
Tssr74966	transcription start site region 74966	321 bp downstream
Tssr74967	transcription start site region 74967	625 bp downstream