rs33140520 SNP Detail

Summary

• ID
  rs33140520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39401867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CACTGGATTC TTCCTGTTAA CTTCACCGAG AGTAGCTACA AAGGTGGACT
  Y
  AGAGCCAAGC ACAATCTCAC AACGATTCCA GAATTCCCTA GAGACCTCTT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	MOLF/EiJ
ss47261676	NES11031747	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	MOLF/EiJ
rs33140520					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261676	NES11031747	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39401867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi184	CpG island 184	659 bp distal
Gm53549	predicted gene, 53549	189 bp downstream
Npas2	neuronal PAS domain protein 2	within coordinates
Rr16114	regulatory region 16114	267 bp distal
Tssr6374	transcription start site region 6374	206 bp upstream