rs33140522 SNP Detail

Summary

• ID
  rs33140522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39402483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAACATT TTGTAATAAA
  TTAACAAGTT TGTACAATTT CCTTGGTCCC TTGTTGTACA TCGACACATA TATCTCTTTT
  CTGGGAAACC TTAACATTTT TTGAGCTGTT GAAAACTTCA GAGGTAAAGT CCTTAGTCTG
  TTTTCCGTTG CTGTGATAAA GTAAGTGCGG CGGAGAAGTC AGAGAAACGG GCTCAGAGTT
  Y
  CAGAGAGTTC ACATGGTCAC GTGGCACTGT TGCTCTGGGC CTGTGGTTGC CTCCAACGTC
  ATCGAATGAG TTCATGGCAG AAAAGGTCTG CTCATTTCAG GACTATCAGG AAGCAAAGAA
  AGAGTAAGGG GCAGGGATGC CAATAAAGGA ATACCACTAA CAGCCTAACT TTGTTCCAGC
  AGCTCCACAT TCTATCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ
ss47261679	NES11031748	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ
rs33140522					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261679	NES11031748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39402483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi184	CpG island 184	1275 bp distal
Gm53549	predicted gene, 53549	within coordinates
Npas2	neuronal PAS domain protein 2	162 bp downstream
Rr16114	regulatory region 16114	883 bp distal
Tssr6374	transcription start site region 6374	405 bp downstream