rs33141234 SNP Detail

Summary

• ID
  rs33141234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA GGTTGTGTGC GTTCAGAAAA
  Y
  ATGTTGACGT CTGACATTGT GGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47261317	NES11577074	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	C	C	C	C	C		C	C	T	C		C
ss322451254	CHEV_7_134358593	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33141234					SNP	C	C	T	T	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261317	NES11577074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	172 bp distal
Cpgi19732	CpG island 19732	132 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	792 bp downstream
Rr655746	regulatory region 655746	1365 bp distal
Rr655747	regulatory region 655747	361 bp proximal
Septin1	septin 1	within coordinates
Tssr69174	transcription start site region 69174	1950 bp downstream
Tssr69175	transcription start site region 69175	1931 bp downstream
Tssr69176	transcription start site region 69176	1890 bp downstream
Tssr69177	transcription start site region 69177	1876 bp downstream
Tssr69178	transcription start site region 69178	835 bp downstream
Tssr69179	transcription start site region 69179	818 bp downstream
Tssr69180	transcription start site region 69180	512 bp downstream
Tssr74959	transcription start site region 74959	1601 bp upstream
Tssr74960	transcription start site region 74960	862 bp upstream
Tssr74961	transcription start site region 74961	316 bp upstream
Tssr74962	transcription start site region 74962	46 bp upstream
Tssr74963	transcription start site region 74963	9 bp upstream
Tssr74964	transcription start site region 74964	6 bp downstream
Tssr74965	transcription start site region 74965	250 bp downstream
Tssr74966	transcription start site region 74966	300 bp downstream
Tssr74967	transcription start site region 74967	604 bp downstream