rs33141239 SNP Detail

Summary

• ID
  rs33141239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCGGCT GGCTCGATCC
  CGGGCCCCAG GTCGAGCCAG ACTCTGTAGG CAGCGAGCCC GGTAGCCCTC GTAGAGCAGA
  TCGTGGGTCA CCTCTTTCAA GTCCTGAAGG TGGGTCTGCA CCAACATCCG CCTCAGGTTC
  AGGAAATCGC AGTGATGTGG GTTCTCCACT AGAGGGCGGA CCAGATAGCT TTGCGTTCAA
  Y
  GCCACCCTTA GGCTCTGCTC TCTGGGAGTA CTTCACTAGT CTAGAGAAGA ACCCAGGATT
  TGCAGCCCAA GGACCCCTCT TGTGGCCTCT AGGAACTCCC AAGACTAGAG CCCACCTCCA
  ACTTCACGTA TGAATTCAGA CCGAACTCCC TACTGCTCTC AAAGCATGCC TGGCCTTACC
  CTCCACGGTA CCCCAGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47261323	NES11577079	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33141239					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261323	NES11577079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	572 bp distal
Cpgi19732	CpG island 19732	within coordinates
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	1192 bp downstream
Rr655746	regulatory region 655746	1765 bp distal
Rr655747	regulatory region 655747	18 bp distal
Septin1	septin 1	within coordinates
Tssr69178	transcription start site region 69178	1235 bp downstream
Tssr69179	transcription start site region 69179	1218 bp downstream
Tssr69180	transcription start site region 69180	912 bp downstream
Tssr74960	transcription start site region 74960	1262 bp upstream
Tssr74961	transcription start site region 74961	716 bp upstream
Tssr74962	transcription start site region 74962	446 bp upstream
Tssr74963	transcription start site region 74963	409 bp upstream
Tssr74964	transcription start site region 74964	376 bp upstream
Tssr74965	transcription start site region 74965	130 bp upstream
Tssr74966	transcription start site region 74966	36 bp upstream
Tssr74967	transcription start site region 74967	204 bp downstream