rs33142073 SNP Detail

Summary

• ID
  rs33142073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143381124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGCACT TGGGAGGCAG
  AGATTAAAGG AGGTGGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAGAG TGAGTTCCAG
  GACAGCCAGG GCTATACAGA GAAACCCTGT CTCAAAAAAA CAAACAAACA AAACAAAAAT
  CTCTGGAGCT GGGATTAGAA ATTACAGTTT ATGCCAGGAA TGGTGGTTCA GGCCTTTGAT
  R
  TCAGCACTCA GGAGGCAGAG GCAGGGGGAG CTCTGTGTGT GAGGCCAGCC TGGTCCAGGA
  CAGCCAGGGT TACACAGAGA AACTGTGTCT CAAAAGGAGG AGGAGGAAGA AGAGGAGGAG
  GAGGAAGAGG AGGAGAAAGA AGTCACAGTT TATTCAGAAG GCAGAGGCAG GGGGACAGAA
  ATTTCAAGGC CTACCTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45742163	mCV22531018	ABI	CRAMUS_MOUSE	f	SNP	A		G	G
ss144597648	ENSMUSSNP4241333	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33142073					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143381124 () rs orientation: forward

Symbol	Name	Function Class
9530056K15Rik	RIKEN cDNA 9530056K15 gene	within coordinates
Gm20635	predicted gene 20635	within coordinates
Gm43398	predicted gene 43398	134 bp upstream
Rr111076	regulatory region 111076	724 bp distal
Rr111077	regulatory region 111077	277 bp proximal
Rr131099	regulatory region 131099	253 bp proximal