rs33142076 SNP Detail

Summary

• ID
  rs33142076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39403425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCAATCA GGACAGATCC
  GAAGGACTCC CACTACCAGC ATGAAGACCA ATGATACCAG CAAGGTAGGT GTGCCTGTGT
  GTGATATGTG CACACATATG CAGCACAGCG GGATGTCTAG GTCTCAGTCA GCTTCAGCCA
  CCTTGTTCAT GATGGTCAGC ATACTAAAAT GAGGGTGCGC CAGAGGTCCT GGCGGTCTCG
  R
  CTGAGTGCTT CTAAGTTCTT GTTCTCTTGT TCAAACAATT GAAAGAAGTA TACACAAATA
  GTGAATTAGC AAGGGTCTAA TTCAAAAAAT AGAGTAAACA TCCAGACTGG ATGCATTGCT
  ATGAAAGCAG TAAGCTCCAA GCAAGATTGC CCTGGGTTAG CCGGGCGTGG TGGCACATGC
  CTTTAATCCC AGCACTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ
ss47261694	NES11031637	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ
rs33142076					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47261694	NES11031637	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39403425 () rs orientation: forward

Symbol	Name	Function Class
Gm53549	predicted gene, 53549	within coordinates
Npas2	neuronal PAS domain protein 2	1104 bp downstream
Rr16114	regulatory region 16114	1825 bp distal
Tssr6374	transcription start site region 6374	1347 bp downstream