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rs33142079 SNP Detail
Summary
  • ID
    rs33142079
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:39403828 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGAGGCAG GAGGATTTCT
    TAGTTCGAGG CCAACCTTGT CTACAAAGTG AGTTCCAGGA CAGCCAGGGC TATACAGAGA
    AACCCTGTTT ATTGTGCAAA GCTTCCTCTT ATGGGACCAG GAGGAGGAGG GGTTAGTTGC
    CAAGGATGAG ATGTAGGTGA TTCTGTGATT CCATTGAAGG GCTTGGGTTA TGTAACCCTT
    Y
    GTTCATTCAA CATGTTCTTT ATCATGATAT GTTTCATCTT ACTCATATGC ATGTCCAATC
    ATGCCCAGGC ATGGTTGGTA AATAGGAGAT TCCCACCCCC ACCCCCCCCA AAAGTTCACT
    CAATGGACAC AGGCTGCCTT ACTGCCCATA TACTGAAGAC CAGCCCAGGC TGAGTTGGGC
    TCACCTCCTG CAGTTCTTTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
DBA/2J
MOLF/EiJ
ss47261697 NES11031577 PERLEGEN MM_PANEL2 f SNP T C
SNP Consensus Information
SNP Consensus Type
DBA/2J
MOLF/EiJ
rs33142079 SNP T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47261697 NES11031577 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:39403828 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm53549 predicted gene, 53549 within coordinates
Npas2 neuronal PAS domain protein 2 1507 bp downstream
Tssr6374 transcription start site region 6374 1750 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory