rs33142522 SNP Detail

Summary

• ID
  rs33142522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126931724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTTTG AGAGTATCAG
  CATGTAGGCC AAATGGCTAA AACTCAAGAT CCTCTGGCCT CTCCTGCTGA ATGCTGAGAT
  TATGAGCTCG GGCAACTATG CCTGCCTGAA ACATGGCATT CACATGAGTG GAAAGAATAA
  ATTATCAAAC TTAAAGCTTT TTAAAATATT CACAAGATTT ATAAAACCAT ATTTCTTTAC
  Y
  TTTATTCGTT TGGGGGGACA TGGGGACAGT GTCTCACTGT GTAGTCCTAG CTGCCTAGAA
  CTTCTAATGT AGATCAGGCT GGCCCTGAGC TCATAGAAAT CTTCCTGCCT CTGATTCCAG
  AGTGCTGACT TTAAAGACAT GTACCACCAC ACCCATGTTT TTTATTTTAT TTTATTTTAT
  TTTATTATTT TTGTGGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47262244	NES11570074	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	C	C	C		T	T	T	T
ss145879499	ENSMUSSNP4055788	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						C
ss322451433	CHEV_7_134476066	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33142522					SNP	T	T	T	C	C	T	C	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47262244	NES11570074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126931724 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	190 bp downstream
Tssr69201	transcription start site region 69201	1018 bp upstream
Tssr69202	transcription start site region 69202	1050 bp upstream
Tssr69203	transcription start site region 69203	1098 bp upstream
Tssr69204	transcription start site region 69204	1229 bp upstream