rs33142696 SNP Detail

Summary

• ID
  rs33142696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153444264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCAAAACAC TAATGCACAT ACAATAATAA AATGAAATAA ACTCATTTGG CTGGGAGGTG
  GTGGTATACA ATTTTAATCC CAGCACTTGG GAGGTAGAGG TAGGTGAATT TCTAAGAATT
  TTTAGGCTAG CCTAGTCTAC AGAGTGAGCG CCAGGACAGT CAGAGCTACA CAGAGAAACC
  CTGTTTTGAA AAAGAGTAAA TTGTTTGAGC ACATAGAAAG CACTGATATA TGAAAATGTC
  AGTTTAAACT CACACTTTTT TTTGTAAAAA GTTGATCTCT TACCCCAGAC AATTAATTCA
  Y
  TAATGTGTTT ATTTACTTAT TTTGAGGCAG GTTCTCATTA TGTAGCTCTG ACTATCCTGG
  AACTCACTAT GGAGACCACC CTGGCCTCGT GTGGTGTGTG TGTGTGTGTG TATGTGTGTG
  TGTGCCACTG GGCCTGGTTT ATAATAGTTT TTTGTTATTG TTGTTTGAGA CAGGATTTTT
  CTGTGGAGGT CTGGCTGTCC TGGAACTTGC TTTGTACAAG ACCAAGCTGG CCTTGAACTC
  AGATATATGC CTGCCTTTGC ATCTTGAGTG CTGGGATTAA AGGTGTATTT CACCATTACC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45242318	mCV23861920	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss147998149	ENSMUSSNP261382	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33142696					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153444264 () rs orientation: forward

Symbol	Name	Function Class
Gm75178	predicted gene, 75178	within coordinates
Rr567697	regulatory region 567697	1152 bp distal
Rr567698	regulatory region 567698	798 bp distal
Rr567699	regulatory region 567699	1392 bp proximal
Rr567700	regulatory region 567700	1553 bp proximal
Tssr20902	transcription start site region 20902	1161 bp downstream