rs33142737 SNP Detail

Summary

• ID
  rs33142737
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144109508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA CAGGCTCTCA ACAACAACAA
  M
  AAAAAAACCC ACCATCAGTG CTCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45242260	mCV22515777	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss147789017	ENSMUSSNP2003566	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
ss320535407	CHEV_2_144093324	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33142737					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144109508 () rs orientation: forward

Symbol	Name	Function Class
Rr566422	regulatory region 566422	1187 bp distal
Rr566423	regulatory region 566423	within coordinates
Rr566424	regulatory region 566424	1362 bp proximal
Snord17	small nucleolar RNA, C/D box 17	1386 bp upstream
Snx5	sorting nexin 5	Intron
Tssr20523	transcription start site region 20523	1493 bp downstream
Tssr26593	transcription start site region 26593	1370 bp upstream