rs33143207 SNP Detail

Summary

• ID
  rs33143207
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155317985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAACAC AGCCTCTTTG
  AAGCACCCTC CATCTTGGGA CCTAAAATCC CTTTAGAGGA TGATCACTAA GATGCTGTCC
  TGACCGCATC TTATATGTAT ACCTGGGTTG TAGACCTGCT CGCTACAGGA GGCCGGTAAT
  GCTGCGCATG CCCCCAGAGA GGCAGAAAAA GCCATAAGAG AGGAAAAGTG GGGTGAGCAG
  S
  TATTGGTCTT GGAATCCAGT CCCACTAGAG CCACTCTTAG AGCAAGCATA TGCTCTGGTT
  TAGGACCCTG AGGGGTGGAG GAGGGTCAGG AGTCACAGGG TGGCTGGGCT TAGGAAAGAG
  TTCTGCTGCC TGCTACCCCT CTACACCCTC TGGAGCTTCT CCATTGGAAG GCCCTGGGTA
  ACTGAGGAGG AACTCTTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777525	NES11004270	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33143207					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777525	NES11004270	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155317985 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	579 bp upstream
Rr1208	regulatory region 1208	1151 bp upstream
Rr88175	regulatory region 88175	216 bp proximal
Tssr40624	transcription start site region 40624	1008 bp upstream
Tssr40625	transcription start site region 40625	1958 bp upstream