rs33143210 SNP Detail

Summary

• ID
  rs33143210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155318613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTGTA CAGGCCCCAG
  GCCCCTCTCT CCTGGAAACA GGGCCTCCTC GTAAATCTGA GCCACACTTG GTTCCTGAGC
  AGGCCCCCTC CCGCCAGCCC GCCCTCGTGC CGTCATTTCT GGCAGGCCCT TGCAGTGAGC
  TCACGCGTTA CATAAGGCAT TCGAGCTATT TCTTGGGGGA ACAGCTCCCC CTTCGTGGGG
  Y
  TCCATTTACC CTCGCCCTCC TCAGCCACCA ACTGCCAAGC CAAGGGAGGT CTGGGCATGA
  AAGGACAGAC CCTGTTCAGG GAAGGAAGGG GGTGCCCCTA CTCCTGCCTA AGGGGCCCCC
  TTGCCATCAG AAAACAGTAG TATTTGCATG AAGGACACAG GAGCCCAGAT GCCCAGGACA
  GGGAGCTCAG AGTAGAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46777528	NES11004273	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33143210					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777528	NES11004273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155318613 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	within coordinates
Rr1208	regulatory region 1208	523 bp upstream
Rr88175	regulatory region 88175	13 bp distal
Tssr40624	transcription start site region 40624	380 bp upstream
Tssr40625	transcription start site region 40625	1330 bp upstream