rs33143218 SNP Detail

Summary

• ID
  rs33143218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95726492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTATGG CTCGGGGGTG
  GTGTTTAAAC CGGGAGTCGG GAGACGACTA CGGAGGAGAC AGAACCTGCG ACGGCGCCGA
  CAACTAAGGC TTTTAGCCTC TACGCTCCTC AACTCTTAAG GCCCTTCCCT CATCCCGTTG
  GCCAAATTCC GGTGAGCCCA GGGCGGCCTT GGTACCGAAG ACGAAACGCT ACTCCGCCGT
  Y
  CCTTCGGCTG CAGAGAGCTT TGCCTTTAGA TTTTCTACCA CAGGAAAGGC CCAAAGCTAC
  CTAGGCAGAA AATTTTCTTT CTTTTTTTTT TTTTCTTTTC TTTTTTTTTT TTTTCTTTTT
  TCTTTTTTTT TTTTTTTTTT GCAACGCAAT AGCAGCAATA GACCAGCAGA AGAAATGCGC
  ACGCGCACGG AAGCCCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46777226	NES10741253	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33143218					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777226	NES10741253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95726492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	within coordinates
Gm29948	predicted gene, 29948	within coordinates
Rprd2	regulation of nuclear pre-mRNA domain containing 2	mRNA-UTR
Rr375410	regulatory region 375410	within coordinates
Rr581038	regulatory region 581038	350 bp distal
Rr581039	regulatory region 581039	within coordinates
Rr581040	regulatory region 581040	369 bp proximal
Tssr30646	transcription start site region 30646	139 bp upstream
Tssr34543	transcription start site region 34543	379 bp upstream
Tssr34544	transcription start site region 34544	303 bp upstream
Tssr34545	transcription start site region 34545	273 bp upstream
Tssr34546	transcription start site region 34546	190 bp upstream
Tssr34547	transcription start site region 34547	105 bp upstream
Tssr34548	transcription start site region 34548	31 bp downstream
Tssr34549	transcription start site region 34549	166 bp downstream