rs33143221 SNP Detail

Summary

• ID
  rs33143221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95726652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGGCCTT GGTACCGAAG
  ACGAAACGCT ACTCCGCCGT CCCTTCGGCT GCAGAGAGCT TTGCCTTTAG ATTTTCTACC
  ACAGGAAAGG CCCAAAGCTA CCTAGGCAGA AAATTTTCTT TCTTTTTTTT TTTTTCTTTT
  CTTTTTTTTT TTTTTCTTTT TTCTTTTTTT TTTTTTTTTT TGCAACGCAA TAGCAGCAAT
  R
  GACCAGCAGA AGAAATGCGC ACGCGCACGG AAGCCCCGCC CCTCCGCTTC CTCCTCAATC
  TTGAGCACGG GGGCCGAGGG GGCGTGATGG CGCTGCGATT CGACCAATCA GGGAAGGGGG
  TCGGAGAAGC GCGTCGGGAC CTGAAGGCGG AGGAGGCGCT GCGTCTCTCT GTGCGCCTGC
  GCGTTAGGTC TGCGCCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46777229	NES10741194	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33143221					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777229	NES10741194	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95726652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	within coordinates
Gm29948	predicted gene, 29948	within coordinates
Rprd2	regulation of nuclear pre-mRNA domain containing 2	mRNA-UTR
Rr375410	regulatory region 375410	within coordinates
Rr581038	regulatory region 581038	510 bp distal
Rr581039	regulatory region 581039	within coordinates
Rr581040	regulatory region 581040	209 bp proximal
Tssr30646	transcription start site region 30646	18 bp downstream
Tssr34543	transcription start site region 34543	539 bp upstream
Tssr34544	transcription start site region 34544	463 bp upstream
Tssr34545	transcription start site region 34545	433 bp upstream
Tssr34546	transcription start site region 34546	350 bp upstream
Tssr34547	transcription start site region 34547	265 bp upstream
Tssr34548	transcription start site region 34548	93 bp upstream
Tssr34549	transcription start site region 34549	6 bp downstream