rs33143954 SNP Detail

Summary

• ID
  rs33143954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95726919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGGGGCCG AGGGGGCGTG
  ATGGCGCTGC GATTCGACCA ATCAGGGAAG GGGGTCGGAG AAGCGCGTCG GGACCTGAAG
  GCGGAGGAGG CGCTGCGTCT CTCTGTGCGC CTGCGCGTTA GGTCTGCGCC TAGCGGGTTG
  GGAGGAAAAC CTGGGGAGGC AGGATTGAGG CGCTCCGGAG CCTAGGACGT TACTAGACCC
  Y
  AGTTCAGTGC TCGGCCCTGC TTTTGGCTTC ATGGCGGGGT TGCTCCCTGG GAGCCTTTAA
  TTCACACTAG GATGGGAAAT GCCCACCGTT CTGTGGCTAC TGTTTTTGAC AGCTGCAGCT
  GCGTTCCCTG CCACCCCGCC ATCGGGGACC TACACGCGAC AAAATGGCTG GCACGTCTTG
  CGGAGTGGGG GAAGACGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46777232	NES10741195	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33143954					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777232	NES10741195	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95726919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	within coordinates
Gm29948	predicted gene, 29948	within coordinates
Rprd2	regulation of nuclear pre-mRNA domain containing 2	mRNA-UTR
Rr375410	regulatory region 375410	within coordinates
Rr581038	regulatory region 581038	777 bp distal
Rr581039	regulatory region 581039	59 bp distal
Rr581040	regulatory region 581040	within coordinates
Tssr30646	transcription start site region 30646	285 bp downstream
Tssr34543	transcription start site region 34543	806 bp upstream
Tssr34544	transcription start site region 34544	730 bp upstream
Tssr34545	transcription start site region 34545	700 bp upstream
Tssr34546	transcription start site region 34546	617 bp upstream
Tssr34547	transcription start site region 34547	532 bp upstream
Tssr34548	transcription start site region 34548	360 bp upstream
Tssr34549	transcription start site region 34549	227 bp upstream