rs33143960 SNP Detail

Summary

• ID
  rs33143960
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95727242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCCTGCC ACCCCGCCAT
  CGGGGACCTA CACGCGACAA AATGGCTGGC ACGTCTTGCG GAGTGGGGGA AGACGCGCAT
  GCGTCAGGCC CTGTTAGCTG TTCTCTAGGC ACTCCTTGAC TAACCTATGC TACACGCCCG
  ACTGCGATGA CACCGTTCAC AGCCAGCCGA CCGACTGCAT TCTAGAAAGA GGGAATAAAA
  S
  TTAAACGAAA ATTTCTCTGA AAAGTCTTCG AAGCGAGGAA AGAGTAATTG ACAAGGTGTG
  GCTTCTTTGC TAGGTAGTAA CATCACAATT TCGTAATGCG TTATAGGTTT GTTTTTGTTT
  TTTCGAGACA AGGTTTTTCT GTGTAGCCCT GGCCGTCCTG GAACTCACTC TGTAGACCAG
  GCTGGCCTCG AACTCAGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46777238	NES10741197	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33143960					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777238	NES10741197	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95727242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	within coordinates
Gm29948	predicted gene, 29948	within coordinates
Rprd2	regulation of nuclear pre-mRNA domain containing 2	1067 bp upstream
Rr375410	regulatory region 375410	within coordinates
Rr581038	regulatory region 581038	1100 bp distal
Rr581039	regulatory region 581039	382 bp distal
Rr581040	regulatory region 581040	within coordinates
Tssr30646	transcription start site region 30646	608 bp downstream
Tssr34543	transcription start site region 34543	1129 bp upstream
Tssr34544	transcription start site region 34544	1053 bp upstream
Tssr34545	transcription start site region 34545	1023 bp upstream
Tssr34546	transcription start site region 34546	940 bp upstream
Tssr34547	transcription start site region 34547	855 bp upstream
Tssr34548	transcription start site region 34548	683 bp upstream
Tssr34549	transcription start site region 34549	550 bp upstream