rs33143963 SNP Detail

Summary

• ID
  rs33143963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95727986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAAGAT TGGACGTTCA
  TGTATTCCTA TTGAACACAG GAACTTCATT TTAATTATGC CAACTCAACG GAAAGGTTTT
  TGAGGCAAGG AGCCTGTTTC ATCATTTAAA ATTAATATCT CTGTGCCAAG AACTGTTTTA
  GGATTAGGGA AATGATGGCA AAGCAGACAA AAATTACTCC GCCTTGATTT GGTATCAGGA
  Y
  CAAACCACAA GCATGTGTCA GGGAGTAAGG AGTCATAAAG AGGTATGGAG TAAGATTAAA
  GGAGAAAGAC TGTGTATATG AATAATGGTG TGATCCAGTT TTTAAAAAGA GATTGAGAAA
  AAAGCAACCA AGCACATATG AGGGGAGGGA AGAAGAGCTG GCAAAAGAAC ACCAAGTGCT
  GAGTCCCTAA ACCAGGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777241	NES10741095	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33143963					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777241	NES10741095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95727986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	643 bp distal
Gm29948	predicted gene, 29948	within coordinates
Rprd2	regulation of nuclear pre-mRNA domain containing 2	1811 bp upstream
Rr375410	regulatory region 375410	82 bp downstream
Rr581038	regulatory region 581038	1844 bp distal
Rr581039	regulatory region 581039	1126 bp distal
Rr581040	regulatory region 581040	240 bp distal
Tssr30646	transcription start site region 30646	1352 bp downstream
Tssr34543	transcription start site region 34543	1873 bp upstream
Tssr34544	transcription start site region 34544	1797 bp upstream
Tssr34545	transcription start site region 34545	1767 bp upstream
Tssr34546	transcription start site region 34546	1684 bp upstream
Tssr34547	transcription start site region 34547	1599 bp upstream
Tssr34548	transcription start site region 34548	1427 bp upstream
Tssr34549	transcription start site region 34549	1294 bp upstream