rs33144019 SNP Detail

Summary

• ID
  rs33144019
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155318808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC AGGACAGGGA GCTCAGAGTA
  S
  AGATACAGAA GAAAGAAGAG AGGGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777537	NES11004279	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	G	G		C	G	G	C	G	G	G
ss148112870	ENSMUSSNP6299709	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33144019					SNP	C	C	C	C	G	G	C	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777537	NES11004279	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155318808 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	within coordinates
Rr1208	regulatory region 1208	328 bp upstream
Rr606421	regulatory region 606421	381 bp distal
Rr606422	regulatory region 606422	620 bp proximal
Rr606423	regulatory region 606423	1177 bp proximal
Rr606424	regulatory region 606424	1386 bp proximal
Tssr40624	transcription start site region 40624	185 bp upstream
Tssr40625	transcription start site region 40625	1135 bp upstream