rs33144193 SNP Detail

Summary

• ID
  rs33144193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126933702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCTTT GATGACTTAG
  TTCATTTCTA CCTATCACTG AGCTCCTTCA GGTTAGGGTA TTCTTTCTGT TCACCTTGGG
  ACGCTCTGGT GACATCATAG GCTAGGGAGC GATATACTAG GTGTAGTTTC ACTGAATTGA
  TGGAGGCTCT GGTAGAGAAA TAGCTTGGGT GGGCCCCAGC ATTGCATCCT TCAGGGCTCT
  R
  CCTTTCCAGG CTCCATCACA CCCCGTAAAG CGTAAAAGTG GTTCAAGGAG CTCCATACAA
  AGCACGTGTG TGGCCGTTTG ACTGACAAAT GTCCCACACA AGCTCAGGCA TCTAAACGCT
  TGGTCCCCGT TGGTGGCTCA GAGAGGCCAC GGGGAGGCAC AGCCTTGCTT GAAGAAGCAC
  GGAAGGGTGG TGAGGGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47262268	NES11569991	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33144193					SNP	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47262268	NES11569991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126933702 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69201	transcription start site region 69201	949 bp downstream
Tssr69202	transcription start site region 69202	905 bp downstream
Tssr69203	transcription start site region 69203	863 bp downstream
Tssr69204	transcription start site region 69204	695 bp downstream
Tssr69205	transcription start site region 69205	183 bp upstream
Tssr74988	transcription start site region 74988	591 bp downstream