rs33144201 SNP Detail

Summary

• ID
  rs33144201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31342897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA GGTGAGTGCC CCAAGTCTAA
  Y
  GTCATTAGCA TGGGGACCAG GGCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39499517	mCV22897709	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss145456784	ENSMUSSNP5924161	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss325358773	CHEV_17_31260868	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33144201					SNP	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss159840438	UOL_MMUSEQ_8999	UOL_CGR	Mmu17_30637692_36837814	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31342897 () rs orientation: forward

Symbol	Name	Function Class
Rr330604	regulatory region 330604	1297 bp distal
Rr334775	regulatory region 334775	1304 bp proximal
Rr341219	regulatory region 341219	1497 bp distal
Tff3	trefoil factor 3, intestinal	1383 bp downstream