rs33144486 SNP Detail

Summary

• ID
  rs33144486
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAACTT TCTCCTGATA
  GTCACAAAGC ATCAGTGGCA TGCTTTCTTG TAAAGATGGC GTTAGCACAC CAACAAGACC
  TGACATTATT CAATGTTAGT GAAGGAATGG GCTGACAGAA TTCTTATATA CTACAAGTGA
  AAACACAGGG TGGAACAACC ACTTCAGAAA AGGTTCTGGA AGTTTCTTTT AAAGCTAATA
  M
  ACACTGAGCC CTGTGACCCA GCAATTTCAT CCCAGGAGAA ATGAAACGTG TTCACAAATT
  GATGATGTGC ATAGAACATT TATAGAAAGT ATGCGCACAA TTCGAAACTC CCCAGGGGCC
  ATTTGAAAGA AGAATAAATT AGCACATCTT GGCACATTCA TACAGTGGAA GACTGCGTCC
  CTGTCAGGAG GATCAGCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45242805	mCV23867902	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss148023838	ENSMUSSNP4708913	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320569677	CHEV_2_154014880	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33144486					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031064 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1674 bp upstream
Rr567773	regulatory region 567773	1347 bp distal
Rr567774	regulatory region 567774	1184 bp proximal
Rr567775	regulatory region 567775	1685 bp proximal
Rr567776	regulatory region 567776	1911 bp proximal
Tssr20971	transcription start site region 20971	1605 bp upstream
Tssr20972	transcription start site region 20972	1619 bp upstream
Tssr20973	transcription start site region 20973	1632 bp upstream
Tssr20974	transcription start site region 20974	1662 bp upstream
Tssr20975	transcription start site region 20975	1689 bp upstream