rs33144880 SNP Detail

Summary

• ID
  rs33144880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5936838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGCCTGCTG CCTGCTGCCT GCTGCCTGCT GCCTGCTGGC TACTGGCTGC TGCCTGCTGC
  CTGCTGCCTG CTGCCTGCTG CCTGCTGCCT GCTGCCTGCT GCCTGCTGCC TGCTGCCTGC
  AGGGCGTTTA CTGAGGATAG GTTTAGTGAG TGCAGCTGCA CTGTCCTCTG TCACAGCCAC
  ATGCCCCACA AGTAGGTGAT CCACTTTGAA AGTTCGAAAA TCAGAGCTAT TTGGGAGAAC
  TGGCTAGTAT ACATAGTCCT GTTGTAGCTC TTGGTCCGGC GGAAAGTGTG GAAGAGTGTC
  Y
  GTGTCTGCTG TGTGAGGCTA GAAGTCATCC TAGGGGCTAG CTCCTGGGCT GAAGAGTGAT
  CCCAAGAGTT TCTGTCGTGT GTAAGGCTGG CATAGCATGC CTGCCTGTGT GCAATGCCTC
  CATTCCTGAG TGGACCCATT ACCAGTGCCT GCATCTGCTT CTGACCACAT GGAAGGGGAG
  GGCTTTTGCT TTAATGAAGC AGGTGTGTTT GGAATTGTAT TTTAGGACCA ACCTCTCTAA
  ATGCAATATG TGCAGGGGCT CTAGTCATTG GGTTCTGAAG GAGCTAGGTG TCCTGAACTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39499682	mCV23634273	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33144880					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5936838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8563	CpG island 8563	441 bp proximal
Rr332307	regulatory region 332307	638 bp distal
Rr332309	regulatory region 332309	963 bp proximal
Rr335511	regulatory region 335511	1563 bp proximal
Rr342320	regulatory region 342320	within coordinates
Rr370166	regulatory region 370166	855 bp downstream
Snx9	sorting nexin 9	within coordinates