rs33145225 SNP Detail

Summary

• ID
  rs33145225
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155319424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC ACACACGCCC TGGGGAGTGG GAGCACAACT ACAGAGACAT GCAAACAGTT
  TGCACTGGAT ATTTCTGAGA GCTGGGCCCT ATCCCAGCTT GTTCCAGAGG GAAATCCTGG
  CTCATGCAAG GAAAGGGTGT TTTTCTCATA TAGCCATTTT TCCTTGCTGC AACAGGGCAG
  W
  AAAAGGGCAC TTGGGTCCAA GCCAAAAAGC TTGCTCTCTC ACTCTCTCTC TCTCTCTTTG
  CCCCCAACCC TGCAGAGTCT GCCTGAGGCC AGAGTTCAGC CTTAAGGAGC AGGAAGCTGA
  GCTCCTTCAG CAGGCTGGCC ACTTCCCCTT TCTGAGGAAG AGACACCCCA GTGGAGCAGC
  TTTCTATGTC CTACCAGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46777546	NES11004283	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T		A	A		T
ss321441324	CHEV_4_154609076	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs33145225					SNP	T	T	T	T	T	A	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777546	NES11004283	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155319424 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	within coordinates
Rr1208	regulatory region 1208	within coordinates
Rr88175	regulatory region 88175	824 bp distal
Tssr40624	transcription start site region 40624	420 bp downstream
Tssr40625	transcription start site region 40625	519 bp upstream